If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ), 'gf_id' => 'HOM05D000643', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000643' ), 'data_identifier' => 'HOM05D000643', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000643', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '887', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p39470' => 'bna', 'A02p17180' => 'bna', 'A05p17760' => 'bna', 'A05p17780' => 'bna', 'A05p17810' => 'bna', 'A05p17820' => 'bna', 'A05p35150' => 'bna', 'A05p35160' => 'bna', 'A05p35170' => 'bna', 'A05p35180' => 'bna', 'A06p00610' => 'bna', 'A06p00630' => 'bna', 'A06p00640' => 'bna', 'A06p00680' => 'bna', 'A08p01290' => 'bna', 'A08p01300' => 'bna', 'A08p01310' => 'bna', 'A08p01320' => 'bna', 'A08p01340' => 'bna', 'A08p01350' => 'bna', 'A08p01360' => 'bna', 'A08p01370' => 'bna', 'Aa31LG10G1380' => 'aar', 'Aa31LG10G1390' => 'aar', 'Aa31LG10G1400' => 'aar', 'Aa31LG10G1410' => 'aar', 'Aa31LG10G1420' => 'aar', 'Aa31LG3G3790' => 'aar', 'Aa31LG4G9370' => 'aar', 'Aa31LG7G2960' => 'aar', 'Aa31LG8G1470' => 'aar', 'Aa31LG8G1480' => 'aar', 'Aa31LG8G1490' => 'aar', 'Actinidia21822' => 'ach', 'Actinidia21823' => 'ach', 'Actinidia24438' => 'ach', 'Actinidia24551' => 'ach', 'Ah.08g217220' => 'amhyb', 'Ah.08g217230' => 'amhyb', 'Ah.08g217240' => 'amhyb', 'Ah.08g217260' => 'amhyb', 'Ah.15g095020' => 'amhyb', 'AL1G30490' => 'aly', 'AL1G62630' => 'aly', 'AL1G62670' => 'aly', 'AL1G62690' => 'aly', 'AL1G62710' => 'aly', 'AL1G62720' => 'aly', 'AL1G62730' => 'aly', 'AL2G30700' => 'aly', 'AL3G26480' => 'aly', 'AL3G26490' => 'aly', 'AL3G26500' => 'aly', 'AL3G26510' => 'aly', 'AL6G38170' => 'aly', 'AL7G48560' => 'aly', 'arahy.Tifrunner.gnm1.ann1.763IQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BT0ZL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CEG41M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2E79M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F1G1GB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G586TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGU960' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5EEF8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFYC81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLZ7CM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W96AKI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0TDVE' => 'arhy', 'AT1G53920' => 'ath', 'AT1G53940' => 'ath', 'AT1G53970' => 'ath', 'AT1G53990' => 'ath', 'AT1G54000' => 'ath', 'AT1G54010' => 'ath', 'AT1G54020' => 'ath', 'AT1G54030' => 'ath', 'AT1G71120' => 'ath', 'AT3G14210' => 'ath', 'AT3G14220' => 'ath', 'AT3G14225' => 'ath', 'AT5G40990' => 'ath', 'ATR0317G003' => 'atr', 'ATR0326G019' => 'atr', 'ATR0561G253' => 'atr', 'ATR0582G039' => 'atr', 'ATR0582G040' => 'atr', 'ATR0582G084' => 'atr', 'ATR0582G139' => 'atr', 'ATR0582G148' => 'atr', 'ATR0582G169' => 'atr', 'ATR0582G356' => 'atr', 'ATR0681G152' => 'atr', 'ATR0681G194' => 'atr', 'Atru.chr1.3669' => 'acertr', 'Atru.chr1.3670' => 'acertr', 'Atru.chr1.4119' => 'acertr', 'Atru.chr1.4120' => 'acertr', 'Atru.chr1.4121' => 'acertr', 'Atru.chr1.4123' => 'acertr', 'Atru.chr1.4125' => 'acertr', 'AUR62001421' => 'cqu', 'AUR62001424' => 'cqu', 'AUR62001425' => 'cqu', 'AUR62001426' => 'cqu', 'AUR62001427' => 'cqu', 'AUR62009940' => 'cqu', 'AUR62009941' => 'cqu', 'AUR62009942' => 'cqu', 'AUR62009946' => 'cqu', 'AUR62009949' => 'cqu', 'AUR62009955' => 'cqu', 'AUR62009956' => 'cqu', 'AUR62009957' => 'cqu', 'BcaB02g10872' => 'bca', 'BcaB02g10874' => 'bca', 'BcaB02g10875' => 'bca', 'BcaB02g10876' => 'bca', 'BcaB04g17034' => 'bca', 'BcaB04g17035' => 'bca', 'BcaB04g17044' => 'bca', 'BcaB04g17047' => 'bca', 'BcaB04g17048' => 'bca', 'BcaB04g17049' => 'bca', 'BcaB05g24645' => 'bca', 'BcaB06g25402' => 'bca', 'BcaB06g25403' => 'bca', 'BcaB06g25404' => 'bca', 'BcaB06g25406' => 'bca', 'BcaB07g32143' => 'bca', 'BcaB07g32144' => 'bca', 'BcaB07g33272' => 'bca', 'BcaB07g33426' => 'bca', 'BcaB07g33428' => 'bca', 'BcaC01g01418' => 'bca', 'BcaC01g01419' => 'bca', 'BcaC01g01420' => 'bca', 'BcaC01g01421' => 'bca', 'BcaC01g01426' => 'bca', 'BcaC01g01428' => 'bca', 'BcaC03g15268' => 'bca', 'BcaC05g29102' => 'bca', 'BcaC05g29103' => 'bca', 'BcaC05g29105' => 'bca', 'BcaC05g29107' => 'bca', 'BcaC08g43570' => 'bca', 'BcaC08g43571' => 'bca', 'BcaC08g43575' => 'bca', 'BcaC08g43576' => 'bca', 'BcaC08g43581' => 'bca', 'BcaC08g44149' => 'bca', 'BcaC08g44152' => 'bca', 'BcaC08g44154' => 'bca', 'BcaC08g44156' => 'bca', 'BcaC09g48391' => 'bca', 'BcaC09g48392' => 'bca', 'BolC1t04989H' => 'bol', 'BolC2t08906H' => 'bol', 'BolC3t16947H' => 'bol', 'BolC3t21502H' => 'bol', 'BolC3t21503H' => 'bol', 'BolC3t21504H' => 'bol', 'BolC3t21505H' => 'bol', 'BolC3t21509H' => 'bol', 'BolC3t21510H' => 'bol', 'BolC3t21511H' => 'bol', 'BolC3t21512H' => 'bol', 'BolC5t33994H' => 'bol', 'BolC5t33995H' => 'bol', 'BolC5t33997H' => 'bol', 'BolC5t33998H' => 'bol', 'BolC5t34004H' => 'bol', 'BolC5t34011H' => 'bol', 'BolC6t36042H' => 'bol', 'BolC6t36044H' => 'bol', 'BolC6t36047H' => 'bol', 'BolC6t36048H' => 'bol', 'BolC6t36049H' => 'bol', 'BolC6t36052H' => 'bol', 'BolC6t36731H' => 'bol', 'BolC6t36732H' => 'bol', 'BolC6t36739H' => 'bol', 'BolC6t36744H' => 'bol', 'BraA01t03988Z' => 'bra', 'BraA02t06764Z' => 'bra', 'BraA05t20668Z' => 'bra', 'BraA05t20670Z' => 'bra', 'BraA05t20672Z' => 'bra', 'BraA05t22328Z' => 'bra', 'BraA05t22329Z' => 'bra', 'BraA05t22330Z' => 'bra', 'BraA06t23275Z' => 'bra', 'BraA06t23276Z' => 'bra', 'BraA06t23301Z' => 'bra', 'BraA08t32179Z' => 'bra', 'BraA08t32180Z' => 'bra', 'BraA08t32181Z' => 'bra', 'BraA08t32182Z' => 'bra', 'BraA08t32184Z' => 'bra', 'BraA08t32186Z' => 'bra', 'BraA08t32187Z' => 'bra', 'BraA08t32188Z' => 'bra', 'C01p50330' => 'bna', 'C01p50360' => 'bna', 'C02p28620' => 'bna', 'C03p46810' => 'bna', 'C03p91810' => 'bna', 'C03p91830' => 'bna', 'C03p91840' => 'bna', 'C03p91850' => 'bna', 'C03p91910' => 'bna', 'C03p91920' => 'bna', 'C05p53160' => 'bna', 'C05p53170' => 'bna', 'C05p53210' => 'bna', 'C05p53230' => 'bna', 'C05p53300' => 'bna', 'C06p09720' => 'bna', 'C06p09730' => 'bna', 'C06p09760' => 'bna', 'C06p09770' => 'bna', 'C06p09800' => 'bna', 'C06p15460' => 'bna', 'C06p15470' => 'bna', 'C06p15480' => 'bna', 'C06p15520' => 'bna', 'CAN.G1318.5' => 'can', 'CAN.G308.36' => 'can', 'CAN.G308.37' => 'can', 'CAN.G73.2' => 'can', 'CAN.G790.69' => 'can', 'CANSAT56G0248' => 'cansat', 'CANSAT56G0669' => 'cansat', 'CANSAT56G0679' => 'cansat', 'CANSAT56G0976' => 'cansat', 'CANSAT56G1002' => 'cansat', 'CANSAT56G1480' => 'cansat', 'CANSAT56G1607' => 'cansat', 'CANSAT56G2111' => 'cansat', 'CANSAT56G2338' => 'cansat', 'CANSAT56G2431' => 'cansat', 'CANSAT56G2833' => 'cansat', 'CANSAT56G3195' => 'cansat', 'CANSAT56G3282' => 'cansat', 'CANSAT56G4496' => 'cansat', 'CARHR044230' => 'chi', 'CARHR044330' => 'chi', 'CARHR044340' => 'chi', 'CARHR044350' => 'chi', 'CARHR044360' => 'chi', 'CARHR089100' => 'chi', 'CARHR089110' => 'chi', 'CARHR089120' => 'chi', 'CARHR089130' => 'chi', 'CARHR089140' => 'chi', 'CARHR213390' => 'chi', 'Carub.0001s4319' => 'cru', 'Carub.0001s4321' => 'cru', 'Carub.0001s4323' => 'cru', 'Carub.0001s4325' => 'cru', 'Carub.0001s4326' => 'cru', 'Carub.0001s4327' => 'cru', 'Carub.0002s1794' => 'cru', 'Carub.0003s1389' => 'cru', 'Carub.0003s1390' => 'cru', 'Carub.0003s1391' => 'cru', 'Carub.0006s2396' => 'cru', 'Carub.0007s3451' => 'cru', 'Carub.0025s0008' => 'cru', 'Cc00_g10620' => 'ccan', 'Cc00_g31720' => 'ccan', 'Cc02_g33020' => 'ccan', 'Cc02_g33040' => 'ccan', 'Cc02_g33050' => 'ccan', 'Cc03_g12420' => 'ccan', 'Cc03_g12430' => 'ccan', 'Cc03_g12440' => 'ccan', 'Cc04_g00850' => 'ccan', 'Cc04_g00870' => 'ccan', 'Cc06_g12720' => 'ccan', 'Cfa003471' => 'cfa', 'Cfa003474' => 'cfa', 'Cfa003477' => 'cfa', 'Cfa003478' => 'cfa', 'Cfa003479' => 'cfa', 'Cfa003480' => 'cfa', 'Cfa003481' => 'cfa', 'Cfa003482' => 'cfa', 'Cfa003484' => 'cfa', 'Cfa003485' => 'cfa', 'Cfa003486' => 'cfa', 'Cfa003487' => 'cfa', 'Cfa015612' => 'cfa', 'Ciclev10010427m.g' => 'ccl', 'Ciclev10025847m.g' => 'ccl', 'Ciclev10025893m.g' => 'ccl', 'Ciclev10026201m.g' => 'ccl', 'Ciclev10027152m.g' => 'ccl', 'Ciclev10027190m.g' => 'ccl', 'CiPaw.01G212600' => 'cil', 'CiPaw.01G212700' => 'cil', 'CiPaw.01G212800' => 'cil', 'CiPaw.01G212900' => 'cil', 'CiPaw.01G213000' => 'cil', 'CiPaw.01G213100' => 'cil', 'CiPaw.01G213200' => 'cil', 'CiPaw.01G213400' => 'cil', 'CiPaw.01G213500' => 'cil', 'CiPaw.02G132200' => 'cil', 'CiPaw.02G132300' => 'cil', 'CiPaw.02G132400' => 'cil', 'CiPaw.03G200200' => 'cil', 'ClCG02G001050' => 'cla', 'ClCG02G001060' => 'cla', 'ClCG02G001070' => 'cla', 'ClCG07G014350' => 'cla', 'ClCG09G001270' => 'cla', 'COL.COLO4_10241' => 'col', 'COL.COLO4_30837' => 'col', 'COL.COLO4_30838' => 'col', 'COL.COLO4_30839' => 'col', 'COL.COLO4_30840' => 'col', 'COL.COLO4_30842' => 'col', 'COL.COLO4_30843' => 'col', 'COL.COLO4_30845' => 'col', 'COL.COLO4_30846' => 'col', 'COL.COLO4_30847' => 'col', 'Cpa.g.c40480' => 'cpa', 'Cpa.g.c42490' => 'cpa', 'Cpa.g.sc25.179' => 'cpa', 'Cpa.g.sc25.180' => 'cpa', 'Cpa.g.sc25.181' => 'cpa', 'Cpa.g.sc25.182' => 'cpa', 'CsaV3_2G017630' => 'csa', 'CsaV3_2G017640' => 'csa', 'CsaV3_2G017650' => 'csa', 'CsaV3_3G030920' => 'csa', 'CsaV3_3G030930' => 'csa', 'CsaV3_3G030940' => 'csa', 'CsaV3_7G034070' => 'csa', 'CsaV3_7G034080' => 'csa', 'CSS0005357' => 'camsi', 'CSS0006372' => 'camsi', 'CSS0014284' => 'camsi', 'CSS0017846' => 'camsi', 'CSS0030026' => 'camsi', 'CSS0032048' => 'camsi', 'CSS0036241' => 'camsi', 'CSS0042887' => 'camsi', 'CSS0044301' => 'camsi', 'CSS0046491' => 'camsi', 'DCAR_010488' => 'dca', 'DCAR_016096' => 'dca', 'DCAR_016097' => 'dca', 'Dinv20392' => 'din', 'Dinv20393' => 'din', 'Dinv25503' => 'din', 'Dinv25504' => 'din', 'Dinv37831' => 'din', 'Duzib052G0672' => 'dzi', 'Duzib052G0727' => 'dzi', 'Duzib052G1198' => 'dzi', 'Duzib132G0474' => 'dzi', 'Duzib160G0227' => 'dzi', 'Duzib192G0050' => 'dzi', 'Duzib235G0946' => 'dzi', 'Duzib235G1114' => 'dzi', 'Duzib235G1454' => 'dzi', 'ECA232G0821' => 'eca', 'ECA233G4173' => 'eca', 'ECA247G0231' => 'eca', 'EL10Ac7g16468' => 'bvu', 'EL10Ac7g16469' => 'bvu', 'EL10Ac7g16474' => 'bvu', 'EL10Ac7g16477' => 'bvu', 'Eucgr.C00766' => 'egr', 'Eucgr.I02141' => 'egr', 'Eucgr.I02142' => 'egr', 'Eucgr.I02143' => 'egr', 'Eucgr.I02144' => 'egr', 'Eucgr.I02145' => 'egr', 'Eucgr.I02146' => 'egr', 'Eucgr.I02148' => 'egr', 'Eucgr.I02150' => 'egr', 'Eucgr.I02152' => 'egr', 'Eucgr.I02153' => 'egr', 'Eucgr.I02154' => 'egr', 'Eucgr.J02601' => 'egr', 'Eucgr.L00833' => 'egr', 'Eucgr.L00835' => 'egr', 'Eucgr.L00836' => 'egr', 'Eucgr.L00839' => 'egr', 'Eucgr.L00840' => 'egr', 'FAN02G1719' => 'fan', 'FAN02G2646' => 'fan', 'FAN02G3027' => 'fan', 'FAN02G4320' => 'fan', 'FAN02G4602' => 'fan', 'FAN05G0394' => 'fan', 'FAN05G0441' => 'fan', 'FAN05G0637' => 'fan', 'FAN05G2341' => 'fan', 'FAN05G4805' => 'fan', 'FAN05G5462' => 'fan', 'FAN05G5598' => 'fan', 'FAN09G0283' => 'fan', 'FAN09G1179' => 'fan', 'FAN09G1682' => 'fan', 'FAN09G2691' => 'fan', 'FAN09G3184' => 'fan', 'FAN09G3617' => 'fan', 'FAN09G4259' => 'fan', 'FAN09G4271' => 'fan', 'FAN09G4352' => 'fan', 'FAN14G0209' => 'fan', 'FAN14G0483' => 'fan', 'FAN14G2153' => 'fan', 'FAN14G2167' => 'fan', 'FAN14G3096' => 'fan', 'FAN14G3168' => 'fan', 'FAN14G3731' => 'fan', 'FAN14G4377' => 'fan', 'FAN14G5096' => 'fan', 'FAN14G5487' => 'fan', 'FAN19G1314' => 'fan', 'FAN23G2004' => 'fan', 'FAN26G2484' => 'fan', 'FAN26G3420' => 'fan', 'FAN28G0573' => 'fan', 'FvH4_1g09430' => 'fve', 'FvH4_6g34510' => 'fve', 'FvH4_6g34520' => 'fve', 'FvH4_6g35490' => 'fve', 'FvH4_6g35500' => 'fve', 'FvH4_6g35520' => 'fve', 'FvH4_6g35540' => 'fve', 'FvH4_6g35550' => 'fve', 'FvH4_6g35571' => 'fve', 'FvH4_6g35572' => 'fve', 'FvH4_6g35580' => 'fve', 'FvH4_6g35584' => 'fve', 'FvH4_6g35600' => 'fve', 'FvH4_6g35610' => 'fve', 'FvH4_6g35630' => 'fve', 'FvH4_6g35631' => 'fve', 'FvH4_6g35640' => 'fve', 'Glyma.03G263900' => 'gma', 'Glyma.07G044100' => 'gma', 'Glyma.07G044200' => 'gma', 'Glyma.09G074000' => 'gma', 'Glyma.15G182900' => 'gma', 'Glyma.15G183000' => 'gma', 'Glyma.15G264200' => 'gma', 'Glyma.15G264300' => 'gma', 'Glyma.16G012402' => 'gma', 'Glyma.16G012500' => 'gma', 'Glyma.19G079700' => 'gma', 'Glyma.19G262800' => 'gma', 'Glyma.19G262900' => 'gma', 'Gohir.A05G046900' => 'ghi', 'Gohir.A05G140800' => 'ghi', 'Gohir.A05G140900' => 'ghi', 'Gohir.A05G141000' => 'ghi', 'Gohir.A12G141200' => 'ghi', 'Gohir.D01G010800' => 'ghi', 'Gohir.D05G048700' => 'ghi', 'Gohir.D05G143001' => 'ghi', 'Gohir.D05G143100' => 'ghi', 'Gohir.D05G143200' => 'ghi', 'Gohir.D12G146100' => 'ghi', 'Gorai.002G012900' => 'gra', 'Gorai.008G157400' => 'gra', 'Gorai.009G050000' => 'gra', 'Gorai.009G146900' => 'gra', 'Gorai.009G147000' => 'gra', 'Gorai.009G147100' => 'gra', 'GSVIVG01015012001' => 'vvi', 'GSVIVG01016685001' => 'vvi', 'GSVIVG01016686001' => 'vvi', 'GSVIVG01016687001' => 'vvi', 'GSVIVG01016688001' => 'vvi', 'GSVIVG01016689001' => 'vvi', 'GSVIVG01016690001' => 'vvi', 'GSVIVG01016691001' => 'vvi', 'GSVIVG01016692001' => 'vvi', 'HanXRQChr03g0094021' => 'han', 'HanXRQChr09g0277191' => 'han', 'Haze_00930' => 'cav', 'Haze_11048' => 'cav', 'Haze_16108' => 'cav', 'Haze_16111' => 'cav', 'Haze_16112' => 'cav', 'Haze_16113' => 'cav', 'Haze_16114' => 'cav', 'Haze_16116' => 'cav', 'Haze_16117' => 'cav', 'Haze_16118' => 'cav', 'Haze_16119' => 'cav', 'Haze_16120' => 'cav', 'Haze_16121' => 'cav', 'Haze_16122' => 'cav', 'Haze_26071' => 'cav', 'Hma1.2p1_0090F.1_g045920' => 'hma', 'Hma1.2p1_0090F.1_g045930' => 'hma', 'Hma1.2p1_0090F.1_g045940' => 'hma', 'Hma1.2p1_0090F.1_g045960' => 'hma', 'HPP92_002377' => 'vpl', 'HPP92_002392' => 'vpl', 'HPP92_027604' => 'vpl', 'Hund03035' => 'sun', 'Hund05709' => 'sun', 'Hund05710' => 'sun', 'Hund18648' => 'sun', 'Hund18650' => 'sun', 'Lalb_Chr04g0261181' => 'lal', 'Lalb_Chr10g0101171' => 'lal', 'Lalb_Chr10g0101181' => 'lal', 'Lalb_Chr14g0365391' => 'lal', 'Lj3g0022803' => 'lja', 'Lj5A31T60' => 'lonja', 'Lj5C31G3' => 'lonja', 'Lj6g0022609' => 'lja', 'Lj7A693T100' => 'lonja', 'Lj9A537T40' => 'lonja', 'Lj9A537T41' => 'lonja', 'Lsat_1_v5_gn_1_38541' => 'lsa', 'Lsat_1_v5_gn_4_91161' => 'lsa', 'Lsat_1_v5_gn_5_171780' => 'lsa', 'Lsat_1_v5_gn_5_171881' => 'lsa', 'Lsat_1_v5_gn_5_171961' => 'lsa', 'Lsat_1_v5_gn_5_172141' => 'lsa', 'Lsat_1_v5_gn_5_172161' => 'lsa', 'Lsat_1_v5_gn_5_172221' => 'lsa', 'Lsat_1_v5_gn_8_41541' => 'lsa', 'Manes.04G149600' => 'mes', 'Manes.04G149900' => 'mes', 'Manes.11G013800' => 'mes', 'Manes.11G013900' => 'mes', 'Manes.11G013950' => 'mes', 'Manes.11G014001' => 'mes', 'Manes.11G014051' => 'mes', 'Manes.11G014100' => 'mes', 'Manes.11G014887' => 'mes', 'Manes.11G015824' => 'mes', 'Manes.11G016761' => 'mes', 'Manes.11G017701' => 'mes', 'Manes.16G090300' => 'mes', 'Mapoly0042s0125' => 'mpo', 'Mapoly0042s0126' => 'mpo', 'Mapoly0049s0010' => 'mpo', 'Mapoly0072s0089' => 'mpo', 'Mapoly0072s0091' => 'mpo', 'Mapoly0095s0012' => 'mpo', 'MBI19_g37994_MAGBIO' => 'mbi', 'MD00G1137100' => 'mdo', 'MD01G1122400' => 'mdo', 'MD02G1102600' => 'mdo', 'MD07G1191900' => 'mdo', 'MD09G1174500' => 'mdo', 'MD09G1174600' => 'mdo', 'MD09G1174700' => 'mdo', 'MD09G1175100' => 'mdo', 'MD09G1175400' => 'mdo', 'MD17G1151700' => 'mdo', 'MD17G1151800' => 'mdo', 'MD17G1152100' => 'mdo', 'Medtr2g044100' => 'mtr', 'Medtr8g022790' => 'mtr', 'Medtr8g022810' => 'mtr', 'Medtr8g031390' => 'mtr', 'Medtr8g031400' => 'mtr', 'Medtr8g031420' => 'mtr', 'Medtr8g031430' => 'mtr', 'MELO3C005633.2' => 'cme', 'MELO3C020956.2' => 'cme', 'MELO3C020957.2' => 'cme', 'MELO3C022690.2' => 'cme', 'MELO3C022693.2' => 'cme', 'MELO3C024317.2' => 'cme', 'MELO3C024318.2' => 'cme', 'MELO3C024319.2' => 'cme', 'MELO3C030868.2' => 'cme', 'Migut.I01122' => 'egut', 'Nitab4.5_0000031g0040' => 'nta', 'Nitab4.5_0000357g0100' => 'nta', 'Nitab4.5_0000414g0020' => 'nta', 'Nitab4.5_0000660g0040' => 'nta', 'Nitab4.5_0001246g0020' => 'nta', 'Nitab4.5_0003273g0040' => 'nta', 'Nitab4.5_0003273g0060' => 'nta', 'Nitab4.5_0003981g0020' => 'nta', 'Nitab4.5_0004154g0010' => 'nta', 'Nitab4.5_0004154g0020' => 'nta', 'Nitab4.5_0004323g0010' => 'nta', 'Nitab4.5_0004853g0010' => 'nta', 'Nitab4.5_0004853g0020' => 'nta', 'Nitab4.5_0005444g0030' => 'nta', 'Nitab4.5_0005690g0040' => 'nta', 'Nitab4.5_0007372g0020' => 'nta', 'Nitab4.5_0007926g0010' => 'nta', 'Nitab4.5_0009715g0020' => 'nta', 'Nitab4.5_0009715g0030' => 'nta', 'Nitab4.5_0009947g0010' => 'nta', 'Nn4g24727' => 'nnu', 'Nn7g36599' => 'nnu', 'Nn8g39948' => 'nnu', 'Nn8g39950' => 'nnu', 'Nn8g39952' => 'nnu', 'Oeu013442.1' => 'oeu', 'Oeu030623.1' => 'oeu', 'Peaxi162Scf00038g02230' => 'pax', 'Peaxi162Scf00119g01410' => 'pax', 'Peaxi162Scf00126g01325' => 'pax', 'Peaxi162Scf00154g00515' => 'pax', 'Peaxi162Scf00154g00520' => 'pax', 'Peaxi162Scf00688g00427' => 'pax', 'Peaxi162Scf00688g00436' => 'pax', 'Peaxi162Scf00798g00114' => 'pax', 'Peaxi162Scf00818g00216' => 'pax', 'PGR017G0001' => 'pgr', 'PGR017G0002' => 'pgr', 'PGR017G0005' => 'pgr', 'PGR017G0006' => 'pgr', 'PGR017G0007' => 'pgr', 'PGR017G0008' => 'pgr', 'PGR017G0009' => 'pgr', 'PGR017G0010' => 'pgr', 'PGR017G0012' => 'pgr', 'PGR042G1554' => 'pgr', 'PGR042G3988' => 'pgr', 'PGR044G2106' => 'pgr', 'PGR044G2708' => 'pgr', 'PGR102G1336' => 'pgr', 'PGR119G0277' => 'pgr', 'PGR119G0555' => 'pgr', 'PGR119G0758' => 'pgr', 'PGR119G1231' => 'pgr', 'PGR119G1378' => 'pgr', 'PGR119G1680' => 'pgr', 'PGR119G1709' => 'pgr', 'PGR119G1721' => 'pgr', 'PGR119G1975' => 'pgr', 'PGR119G2096' => 'pgr', 'PGR119G2116' => 'pgr', 'PGR119G2544' => 'pgr', 'PGR142G1841' => 'pgr', 'PGSC0003DMG400005182' => 'stu', 'PGSC0003DMG400006302' => 'stu', 'PGSC0003DMG400006303' => 'stu', 'PGSC0003DMG400006677' => 'stu', 'PGSC0003DMG400009143' => 'stu', 'PGSC0003DMG400028854' => 'stu', 'PGSC0003DMG400029004' => 'stu', 'PGSC0003DMG400031313' => 'stu', 'Phvul.009G223500' => 'pvu', 'Phvul.009G262300' => 'pvu', 'Phvul.010G021001' => 'pvu', 'Phvul.010G124800' => 'pvu', 'Potri.003G071400' => 'ptr', 'Potri.003G071500' => 'ptr', 'Potri.004G084366' => 'ptr', 'Potri.004G084500' => 'ptr', 'Potri.007G133500' => 'ptr', 'Potri.007G133700' => 'ptr', 'Potri.007G133766' => 'ptr', 'Potri.013G065100' => 'ptr', 'Potri.017G132200' => 'ptr', 'Potri.017G134350' => 'ptr', 'Potri.017G134601' => 'ptr', 'Potri.017G134701' => 'ptr', 'Potri.017G136501' => 'ptr', 'Potri.017G136601' => 'ptr', 'Potri.017G137000' => 'ptr', 'Potri.018G063901' => 'ptr', 'Pp3c11_25640' => 'ppa', 'Prupe.3G032600' => 'ppe', 'Prupe.3G032700' => 'ppe', 'Prupe.3G032900' => 'ppe', 'Prupe.3G033100' => 'ppe', 'Prupe.3G033200' => 'ppe', 'Prupe.3G033300' => 'ppe', 'Prupe.3G033400' => 'ppe', 'Prupe.3G033500' => 'ppe', 'Prupe.3G033600' => 'ppe', 'Prupe.7G191700' => 'ppe', 'Psat4g152680' => 'psa', 'Psat4g166200' => 'psa', 'Psat4g166280' => 'psa', 'PSO017G5231' => 'pso', 'PSO478G3586' => 'pso', 'QL01p041706' => 'qlo', 'QL01p041718' => 'qlo', 'QL04p014346' => 'qlo', 'QL04p014348' => 'qlo', 'QL04p014355' => 'qlo', 'QL04p014373' => 'qlo', 'QL04p014378' => 'qlo', 'QL04p014388' => 'qlo', 'QL04p014400' => 'qlo', 'QL04p068926' => 'qlo', 'QL05p001560' => 'qlo', 'QL05p001584' => 'qlo', 'QL05p001601' => 'qlo', 'QL05p001610' => 'qlo', 'QL05p001618' => 'qlo', 'QL05p001624' => 'qlo', 'QL05p001704' => 'qlo', 'QL05p001826' => 'qlo', 'QL05p001839' => 'qlo', 'QL05p001843' => 'qlo', 'QL05p001852' => 'qlo', 'QL05p083959' => 'qlo', 'QL08p042360' => 'qlo', 'QL08p042386' => 'qlo', 'QL08p042404' => 'qlo', 'QL08p042413' => 'qlo', 'QL08p042445' => 'qlo', 'QL08p042459' => 'qlo', 'QL08p042465' => 'qlo', 'QL08p042483' => 'qlo', 'QL93p0230_0017' => 'qlo', 'RcHm_v2.0_Chr2g0095981' => 'rch', 'RcHm_v2.0_Chr2g0144821' => 'rch', 'RcHm_v2.0_Chr2g0145011' => 'rch', 'RcHm_v2.0_Chr2g0145061' => 'rch', 'RcHm_v2.0_Chr2g0147051' => 'rch', 'RcHm_v2.0_Chr2g0147071' => 'rch', 'RcHm_v2.0_Chr2g0147111' => 'rch', 'RcHm_v2.0_Chr2g0147141' => 'rch', 'RcHm_v2.0_Chr2g0147161' => 'rch', 'RcHm_v2.0_Chr2g0147301' => 'rch', 'RcHm_v2.0_Chr2g0147311' => 'rch', 'RcHm_v2.0_Chr2g0147391' => 'rch', 'RcHm_v2.0_Chr2g0147431' => 'rch', 'RcHm_v2.0_Chr2g0147441' => 'rch', 'RcHm_v2.0_Chr2g0147471' => 'rch', 'RcHm_v2.0_Chr2g0147491' => 'rch', 'RcHm_v2.0_Chr2g0147591' => 'rch', 'RcHm_v2.0_Chr2g0147631' => 'rch', 'RcHm_v2.0_Chr2g0147911' => 'rch', 'RcHm_v2.0_Chr2g0148061' => 'rch', 'RcHm_v2.0_Chr4g0407441' => 'rch', 'RcHm_v2.0_Chr4g0407471' => 'rch', 'RcHm_v2.0_Chr4g0433761' => 'rch', 'RcHm_v2.0_Chr6g0252881' => 'rch', 'RcHm_v2.0_Chr7g0228391' => 'rch', 'RcHm_v2.0_Chr7g0228411' => 'rch', 'Rhsim02G0226300' => 'rsi', 'Rhsim02G0226400' => 'rsi', 'Rhsim02G0226600' => 'rsi', 'Rhsim02G0226800' => 'rsi', 'Rhsim08G0242800' => 'rsi', 'Rhsim08G0242900' => 'rsi', 'Rhsim12G0212600' => 'rsi', 'RhsimUnG0098900' => 'rsi', 'Sabra03G0042500' => 'sbr', 'SalBow6G5949' => 'sbo', 'Sc12g0010850' => 'sci', 'Sc12g0010860' => 'sci', 'Sc12g0010870' => 'sci', 'Sc12g0010880' => 'sci', 'Sc15g0000740' => 'sci', 'Sed0003309' => 'sed', 'Sed0004039' => 'sed', 'Sed0007801' => 'sed', 'Sed0011901' => 'sed', 'Sed0012637' => 'sed', 'Sed0015858' => 'sed', 'Sed0016568' => 'sed', 'SGA_v2.0_scaffold11G05532' => 'sas', 'SGA_v2.0_scaffold122G33313' => 'sas', 'SGA_v2.0_scaffold170G38823' => 'sas', 'SGA_v2.0_scaffold71G23909' => 'sas', 'SMO236G0027' => 'smo', 'SMO236G0076' => 'smo', 'SMO265G0027' => 'smo', 'SMO343G0041' => 'smo', 'SMO343G0108' => 'smo', 'SMO358G0258' => 'smo', 'SMO361G0216' => 'smo', 'SMO361G0728' => 'smo', 'SMO367G0003' => 'smo', 'SMO367G0252' => 'smo', 'SMO367G0346' => 'smo', 'SMO367G0462' => 'smo', 'SMO367G1139' => 'smo', 'Solyc01g109020.3' => 'sly', 'Solyc04g007570.2' => 'sly', 'Solyc04g024840.3' => 'sly', 'Solyc04g028470.2' => 'sly', 'Solyc06g064960.3' => 'sly', 'Solyc06g064970.4' => 'sly', 'Solyc06g064980.3' => 'sly', 'Solyc06g064990.2' => 'sly', 'Solyc06g065010.4' => 'sly', 'Solyc11g021040.3' => 'sly', 'Solyc11g051060.2' => 'sly', 'Solyc11g051100.3' => 'sly', 'Solyc11g051120.3' => 'sly', 'Solyc12g049550.2' => 'sly', 'Sopen04g010820' => 'spe', 'Sopen04g015080' => 'spe', 'Sopen06g023470' => 'spe', 'Sopen06g023480' => 'spe', 'Sopen06g023500' => 'spe', 'Sopen06g023520' => 'spe', 'Sopen11g022410' => 'spe', 'Sopen12g024020' => 'spe', 'Sp1g40400' => 'spa', 'Sp1g40430' => 'spa', 'Sp1g40440' => 'spa', 'Sp1g40450' => 'spa', 'Sp1g40460' => 'spa', 'Sp3g12490' => 'spa', 'Sp3g12500' => 'spa', 'Sp3g12510' => 'spa', 'Sp5g26290' => 'spa', 'SpUn0244_0020' => 'spa', 'SpUn0420_0010' => 'spa', 'SpUn0420_0030' => 'spa', 'TAR374G1068' => 'tar', 'TAR381G0537' => 'tar', 'TAR381G1642' => 'tar', 'TAR383G0678' => 'tar', 'TAR623G1100' => 'tar', 'TAR624G1224' => 'tar', 'TAR636G2674' => 'tar', 'THA.LOC104810379' => 'tha', 'THA.LOC104810380' => 'tha', 'THA.LOC104810381' => 'tha', 'THA.LOC104810382' => 'tha', 'THA.LOC104810384' => 'tha', 'THA.LOC104810385' => 'tha', 'THA.LOC104810386' => 'tha', 'THA.LOC104810387' => 'tha', 'THA.LOC104815602' => 'tha', 'THA.LOC104815603' => 'tha', 'THA.LOC104815604' => 'tha', 'THA.LOC104822622' => 'tha', 'THA.LOC104822623' => 'tha', 'THA.LOC104822624' => 'tha', 'THA.LOC104822625' => 'tha', 'Thecc.02G139500' => 'tca', 'Thecc.02G139600' => 'tca', 'Thecc.02G139700' => 'tca', 'Thecc.02G139900' => 'tca', 'Thecc.02G140000' => 'tca', 'Thecc.06G127800' => 'tca', 'Thecc.06G127900' => 'tca', 'Thecc.06G128000' => 'tca', 'Thecc.06G128100' => 'tca', 'Thecc.06G128200' => 'tca', 'Thecc.09G070100' => 'tca', 'Thhalv10011556m.g' => 'esa', 'Thhalv10011561m.g' => 'esa', 'Thhalv10011563m.g' => 'esa', 'Thhalv10011572m.g' => 'esa', 'Thhalv10011584m.g' => 'esa', 'Thhalv10011623m.g' => 'esa', 'Thhalv10019429m.g' => 'esa', 'Thhalv10020877m.g' => 'esa', 'Thhalv10020881m.g' => 'esa', 'Thhalv10020898m.g' => 'esa', 'Thhalv10020963m.g' => 'esa', 'Thhalv10021005m.g' => 'esa', 'Thhalv10022376m.g' => 'esa', 'TPR.G16664' => 'tpr', 'TPR.G24676' => 'tpr', 'TPR.G30218' => 'tpr', 'TPR.G4357' => 'tpr', 'TPR.G4414' => 'tpr', 'TPR.G4431' => 'tpr', 'TWI14G0901' => 'twi', 'TWI56G0718' => 'twi', 'TWI56G1104' => 'twi', 'TWI56G1170' => 'twi', 'TWI56G1254' => 'twi', 'TWI56G1279' => 'twi', 'TWI59G1386' => 'twi', 'vmacro15073' => 'vma', 'vmacro15074' => 'vma', 'VMungo0331G0052' => 'vmu', 'VMungo0331G0311' => 'vmu', 'VMungo0331G1332' => 'vmu', 'VMungo0331G1702' => 'vmu', 'VMungo1309G0606' => 'vmu', 'VMungo1309G0741' => 'vmu', 'VMungo1309G2761' => 'vmu' ) $gf_id = 'HOM05D000643' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000643' ) $data_identifier = 'HOM05D000643' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 46, 'aar' => (int) 11, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 14, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 12, 'acertr' => (int) 7, 'cqu' => (int) 13, 'bca' => (int) 42, 'bol' => (int) 27, 'bra' => (int) 19, 'can' => (int) 5, 'cansat' => (int) 14, 'chi' => (int) 11, 'cru' => (int) 13, 'ccan' => (int) 11, 'cfa' => (int) 13, 'ccl' => (int) 6, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 10, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 18, 'fan' => (int) 36, 'fve' => (int) 17, 'gma' => (int) 13, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 2, 'cav' => (int) 15, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 2, 'lonja' => (int) 5, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 6, 'mbi' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 1, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 2, 'pax' => (int) 9, 'pgr' => (int) 27, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 16, 'ppa' => (int) 1, 'ppe' => (int) 10, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 31, 'rch' => (int) 26, 'rsi' => (int) 8, 'sbr' => (int) 1, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 7, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 14, 'spe' => (int) 8, 'spa' => (int) 12, 'tar' => (int) 7, 'tha' => (int) 15, 'tca' => (int) 11, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 7 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1309G2761' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1